Noise issue when playing files with higher sample rates

When I switch from lower sample rate file (44.1) to higher sample rate files (88.2 or 96), the higher res file would not play correctly. Then if I Simply press stop on the mpd client and press play again. The file will then play correctly.

Did anybody had the same troubles? Is there a solution?

I play flac files stored on external usb disk with own power supply.
Volumio 1.5 is installed on cubietruch which is connected to marantz hd-dac1 through usb.